STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0277PFAM: protein of unknown function DUF1499; KEGG: azc:AZC_1485 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Snov_0276
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xau:Xaut_2473 hydrolase.
       0.783
Snov_0600
PFAM: AsmA family protein; KEGG: azc:AZC_2242 putative assembly of outer membrane protein.
 
     0.736
Snov_0675
KEGG: xau:Xaut_1409 hypothetical protein.
  
     0.720
Snov_4019
PFAM: conserved hypothetical protein; KEGG: xau:Xaut_1477 hypothetical protein.
  
     0.701
Snov_2715
PFAM: protein of unknown function DUF459; KEGG: xau:Xaut_1975 hypothetical protein.
  
     0.680
Snov_3700
KEGG: xau:Xaut_1938 hypothetical protein.
  
     0.670
Snov_0676
PFAM: protein of unknown function DUF1214; KEGG: xau:Xaut_1410 hypothetical protein.
  
     0.648
Snov_3354
Transcriptional activator ligand binding domain protein; PFAM: transcription activator effector binding; KEGG: azc:AZC_3711 putative transcription activator.
  
     0.646
Snov_3800
PFAM: Protein of unknown function DUF2159, secreted; KEGG: azc:AZC_0568 hypothetical protein.
  
     0.639
Snov_0915
KEGG: azc:AZC_1780 hypothetical protein.
  
     0.638
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.