STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0303TIGRFAM: double-strand break repair protein AddB; KEGG: azc:AZC_0713 hypothetical protein. (1013 aa)    
Predicted Functional Partners:
Snov_0304
KEGG: azc:AZC_0714 putative exonuclease V; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
   
 0.981
Snov_3412
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.793
Snov_0301
PFAM: protein of unknown function UPF0079; aminoglycoside phosphotransferase; KEGG: xau:Xaut_3297 hypothetical protein.
       0.756
Snov_4504
PFAM: Protein of unknown function DUF2312; KEGG: xau:Xaut_3694 hypothetical protein; Belongs to the UPF0335 family.
  
     0.749
Snov_3111
PFAM: Protein of unknown function DUF2312; KEGG: xau:Xaut_3694 hypothetical protein; Belongs to the UPF0335 family.
  
     0.748
Snov_0302
PFAM: Nucleotidyl transferase; KEGG: xau:Xaut_3298 nucleotidyl transferase.
       0.743
Snov_3094
PFAM: protein of unknown function DUF1321; KEGG: xau:Xaut_1418 hypothetical protein.
  
     0.741
Snov_0300
KEGG: met:M446_0500 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
     0.734
Snov_3801
KEGG: xau:Xaut_1448 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
 
   
 0.723
Snov_1098
PFAM: DNA polymerase III chi subunit HolC; KEGG: azc:AZC_0540 DNA polymerase III chi subunit.
  
     0.707
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.