STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0376TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6505 ABC transporter permease/ATP-binding protein; SMART: AAA ATPase. (541 aa)    
Predicted Functional Partners:
Snov_0384
KEGG: bxe:Bxe_A2433 polar amino acid ABC transporter inner membrane protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
0.948
Snov_0382
KEGG: bxe:Bxe_A2431 polar amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
0.940
Snov_0375
KEGG: bja:blr4463 ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.936
Snov_0081
Multi-sensor hybrid histidine kinase; KEGG: azc:AZC_3923 response regulator receiver; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
  
  
 0.769
Snov_0377
PFAM: Acetamidase/Formamidase; KEGG: bra:BRADO1537 hypothetical protein.
     0.762
Snov_0378
Transcriptional regulator, AraC family with acetamidase/formamidase activity; KEGG: bja:blr4466 transcriptional regulatory protein; PFAM: Acetamidase/Formamidase; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
   
 0.734
Snov_3126
KEGG: smd:Smed_2979 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
 
 0.713
Snov_2713
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.704
Snov_1398
KEGG: azc:AZC_1586 amino acid ABC transporter permease protein precursor; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
  
 
0.691
Snov_0383
KEGG: bxe:Bxe_A2432 polar amino acid ABC transporter inner membrane protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
0.681
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.