STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0435PFAM: protein of unknown function DUF156; KEGG: met:M446_3505 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Snov_2400
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: oca:OCAR_6856 alcohol dehydrogenase class 3.
  
  
 0.805
Snov_3463
KEGG: rlg:Rleg_3796 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase.
  
  
 0.682
Snov_0434
PFAM: SNARE associated Golgi protein; KEGG: oan:Oant_1851 SNARE associated Golgi protein.
       0.532
Snov_0436
PFAM: MscS Mechanosensitive ion channel; KEGG: azc:AZC_2392 mechanosensitive ion channel.
       0.501
Snov_0475
PFAM: protein of unknown function DUF156; KEGG: xau:Xaut_3092 hypothetical protein.
  
     0.415
Snov_0433
PFAM: high-affinity nickel-transporter; KEGG: pst:PSPTO_4280 nickel/cobalt efflux protein RcnA; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.406
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.