STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0481KEGG: mno:Mnod_3729 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR. (260 aa)    
Predicted Functional Partners:
Snov_0505
PFAM: FAD dependent oxidoreductase; KEGG: met:M446_1975 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.689
ade
TIGRFAM: adenine deaminase; KEGG: gox:GOX1719 adenine deaminase; PFAM: amidohydrolase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
       0.528
Snov_0480
PFAM: aldo/keto reductase; KEGG: oan:Oant_1146 aldo/keto reductase.
       0.528
Snov_0483
PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_2006 AMP-dependent synthetase and ligase.
  
    0.520
Snov_0482
KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.516
Snov_0484
PFAM: BioY protein; KEGG: dac:Daci_4601 BioY protein.
       0.513
Snov_0485
PFAM: cobalt transport protein; KEGG: azc:AZC_3756 putative cobalt transport system permease protein.
       0.513
Snov_0486
KEGG: azc:AZC_3755 ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.513
Snov_0511
PFAM: extracellular solute-binding protein family 1; KEGG: rpe:RPE_1384 extracellular solute-binding protein.
 
     0.496
Snov_0354
KEGG: azc:AZC_0344 PTS IIA-like nitrogen-regulatory protein; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
 
  
 0.495
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.