STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0487PFAM: aldo/keto reductase; KEGG: azc:AZC_2900 aldo/keto reductase. (277 aa)    
Predicted Functional Partners:
Snov_0480
PFAM: aldo/keto reductase; KEGG: oan:Oant_1146 aldo/keto reductase.
 
 
0.608
Snov_1759
PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding; KEGG: azc:AZC_0036 putative fatty acid synthase transmembrane protein.
  
 
 0.603
Snov_2320
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.579
Snov_0482
KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.546
Snov_2339
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.538
Snov_0488
KEGG: met:M446_4592 hypothetical protein.
       0.536
Snov_0483
PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_2006 AMP-dependent synthetase and ligase.
  
 
 0.535
Snov_0485
PFAM: cobalt transport protein; KEGG: azc:AZC_3756 putative cobalt transport system permease protein.
  
    0.500
Snov_0484
PFAM: BioY protein; KEGG: dac:Daci_4601 BioY protein.
       0.493
Snov_0486
KEGG: azc:AZC_3755 ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.493
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.