STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0497PFAM: extracellular solute-binding protein family 1; KEGG: rlg:Rleg_3723 extracellular solute-binding protein family 1. (387 aa)    
Predicted Functional Partners:
Snov_0500
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5383 ABC transporter permease protein.
 
  
 0.913
Snov_0501
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c21720 putative transmembrane component of ABC transporter.
 
  
 0.889
Snov_0496
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mlr5377 transcriptional regulator.
 
     0.877
Snov_0499
ABC transporter related protein; KEGG: rec:RHECIAT_CH0003932 probable spermidine/putrescine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    0.873
Snov_0502
KEGG: ara:Arad_3974 betaine-aldehyde dehydrogenase protein; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.816
Snov_2042
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b19760 ABC transporter permease protein.
 
  
 0.728
Snov_1572
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpd:BURPS668_A0367 transcriptional regulator.
  
     0.686
Snov_4120
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll2888 ABC transporter, permease.
 
  
 0.529
Snov_4063
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_352 probable polyamine ABC-transporter integral membrane protein.
 
  
 0.506
Snov_4121
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll2887 ABC transporter, permease.
 
  
 0.499
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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