STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0498Hypothetical protein; KEGG: ape:APE_2384 acetyl-CoA acetyltransferase. (119 aa)    
Predicted Functional Partners:
Snov_0499
ABC transporter related protein; KEGG: rec:RHECIAT_CH0003932 probable spermidine/putrescine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.773
Snov_0500
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5383 ABC transporter permease protein.
       0.773
Snov_0501
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_c21720 putative transmembrane component of ABC transporter.
       0.482
Snov_0502
KEGG: ara:Arad_3974 betaine-aldehyde dehydrogenase protein; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.473
Snov_0497
PFAM: extracellular solute-binding protein family 1; KEGG: rlg:Rleg_3723 extracellular solute-binding protein family 1.
       0.459
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.