STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0528KEGG: rlt:Rleg2_2054 putative hydrolase protein. (255 aa)    
Predicted Functional Partners:
Snov_1552
PFAM: alpha/beta hydrolase fold; KEGG: Esterase PIR7B, putative.
  
     0.752
Snov_3659
PFAM: alpha/beta hydrolase fold; KEGG: mno:Mnod_0813 alpha/beta hydrolase fold protein.
  
     0.694
Snov_3457
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gvi:glr1439 hypothetical protein.
  
   0.659
Snov_2683
PFAM: NmrA family protein; KEGG: bmj:BMULJ_04545 fusion protein of NAD-dependent epimerase/dehydratase and GCN5-related N-acetyltransferase.
 
    0.611
Snov_2681
PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: bph:Bphy_5577 NmrA family protein.
 
    0.605
Snov_0551
KEGG: mdi:METDI4456 beta-lactamase-like.
  
    0.487
Snov_2939
PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C7708 epoxide hydrolase.
  
     0.455
Snov_1202
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: mno:Mnod_2288 metal dependent phosphohydrolase.
  
     0.443
acdS
1-aminocyclopropane-1-carboxylate deaminase; Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source; Belongs to the ACC deaminase/D-cysteine desulfhydrase family.
       0.439
Snov_4297
KEGG: bcj:BCAL1742 extracellular solute-binding protein.
  
     0.401
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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