STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0543PFAM: sulfatase; KEGG: bbr:BB4315 putative sulfatase. (480 aa)    
Predicted Functional Partners:
Snov_1146
PFAM: protein of unknown function DUF323; KEGG: bbt:BBta_6827 putative nitrate reductase.
 
   0.684
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.644
Snov_0542
PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: rpt:Rpal_5036 TRAP dicarboxylate transporter-DctP subunit.
       0.636
Snov_1759
PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding; KEGG: azc:AZC_0036 putative fatty acid synthase transmembrane protein.
 
 
 0.595
Snov_0544
KEGG: bbr:BB4313 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
       0.555
Snov_0538
PFAM: protein of unknown function DUF126; KEGG: mms:mma_2389 hypothetical protein.
       0.553
Snov_0539
PFAM: protein of unknown function DUF521; KEGG: mms:mma_2388 hypothetical protein.
       0.553
Snov_0540
KEGG: rpa:RPA1784 TRAP dicarboxylate family transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
       0.553
Snov_0541
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bpt:Bpet2787 putative integral membrane protein.
       0.553
Snov_0537
PFAM: protein of unknown function DUF202; KEGG: pct:PC1_2741 hypothetical protein.
       0.497
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.