STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0598PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3763 binding-protein-dependent transport systems inner membrane component. (554 aa)    
Predicted Functional Partners:
Snov_0597
PFAM: extracellular solute-binding protein family 1; KEGG: xau:Xaut_3764 extracellular solute-binding protein.
 
 
 0.988
Snov_1885
KEGG: xau:Xaut_4408 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.955
Snov_3519
PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_4877 extracellular solute-binding protein.
 
 
 0.928
Snov_0518
PFAM: extracellular solute-binding protein family 1; KEGG: tga:TGAM_1016 ABC-type Fe3+ transport system, periplasmic component (FbpA/AfuA).
 
 
 0.921
Snov_3523
TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; KEGG: smd:Smed_4878 ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.896
Snov_1023
PFAM: extracellular solute-binding protein family 1; KEGG: bcj:BCAM1379 ABC transporter substrate-binding protein.
 
 
 0.895
Snov_1025
KEGG: bcj:BCAM1377 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.889
Snov_0516
ABC transporter related protein; KEGG: tga:TGAM_1014 ABC-type transport system, ATPase component, putative Fe3+ transporter (FbpC/AfuC); PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.878
Snov_4305
ABC transporter related protein; KEGG: oca:OCAR_6182 multiple sugar-binding transport ATP-binding protein MsmK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.857
Snov_4300
PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4658 extracellular solute-binding protein.
 
  
 0.473
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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