STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0634TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; KEGG: ara:Arad_8490 sensory box/GGDEF family protein; SMART: GGDEF domain containing protein. (300 aa)    
Predicted Functional Partners:
Snov_1993
KEGG: lic:LIC11203 response regulator; PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver.
  
 0.982
Snov_3867
EAL domain protein; KEGG: sml:Smlt0525 putative transmembrane EAL domain protein; PFAM: EAL domain protein; SMART: EAL domain protein.
 
   
 0.976
Snov_3968
KEGG: ctt:CtCNB1_1625 diguanylate phosphodiesterase with GAF sensor; PFAM: EAL domain protein; GAF domain protein; SMART: EAL domain protein; GAF domain protein.
  
 0.947
Snov_0521
Putative GAF sensor protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: GAF domain protein; regulatory protein MerR; KEGG: rpe:RPE_2603 putative GAF sensor protein; SMART: GAF domain protein.
    
 0.900
Snov_2516
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold domain protein; GAF domain protein; GGDEF domain containing protein; KEGG: azc:AZC_3085 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; GAF domain protein.
 
 0.855
Snov_2739
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: nha:Nham_0628 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
  
 0.810
Snov_0633
PFAM: protein of unknown function DUF1006; KEGG: ret:RHE_CH00931 hypothetical protein.
       0.773
Snov_0961
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; KEGG: gdj:Gdia_1184 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver.
 
 
0.613
Snov_0962
KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
  
 0.563
Snov_1990
CheA signal transduction histidine kinase; KEGG: mxa:MXAN_6951 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein.
 
  
 0.545
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.