STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0671PFAM: Peptidoglycan-binding domain 1 protein; KEGG: xau:Xaut_1407 peptidoglycan binding domain-containing protein. (225 aa)    
Predicted Functional Partners:
Snov_0672
PFAM: protein of unknown function DUF1491; KEGG: azc:AZC_1095 hypothetical protein.
       0.789
Snov_2261
PFAM: Apolipoprotein A1/A4/E; KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.756
Snov_1648
KEGG: azc:AZC_1545 hypothetical protein.
  
     0.749
Snov_4020
KEGG: azc:AZC_0400 hypothetical protein.
  
     0.746
Snov_0915
KEGG: azc:AZC_1780 hypothetical protein.
  
     0.744
Snov_1699
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_3868 invasion associated locus B family protein.
  
     0.731
Snov_0611
Phasin 2; KEGG: nha:Nham_1250 phasin 2.
  
     0.728
Snov_3800
PFAM: Protein of unknown function DUF2159, secreted; KEGG: azc:AZC_0568 hypothetical protein.
  
     0.726
Snov_0901
PFAM: Protein of unknown function DUF2059; KEGG: azc:AZC_2357 hypothetical protein.
  
     0.704
Snov_2991
KEGG: azc:AZC_4671 hypothetical protein.
  
     0.700
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.