STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0717KEGG: xau:Xaut_3170 NlpC/P60 family phage cell wall peptidase; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein. (143 aa)    
Predicted Functional Partners:
Snov_0714
KEGG: xau:Xaut_3164 gene transfer agent (GTA) orfg11.
 
  
 0.961
Snov_0715
PFAM: conserved hypothetical protein; KEGG: xau:Xaut_3168 hypothetical protein.
 
     0.951
Snov_0716
PFAM: Phage conserved hypothetical protein, gene transfer agent-like-like; KEGG: nwi:Nwi_1179 hypothetical protein.
 
     0.951
Snov_0712
KEGG: xau:Xaut_3162 gene transfer agent (GTA) like protein.
 
    0.944
Snov_0718
KEGG: xau:Xaut_3171 gene transfer agent (GTA) orfg15, like protein.
 
   
 0.905
Snov_0711
KEGG: xau:Xaut_3161 TP901-1 family phage major tail protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1.
 
     0.880
Snov_0710
KEGG: xau:Xaut_3160 hypothetical protein.
 
     0.841
Snov_0719
KEGG: nwi:Nwi_0791 hypothetical protein.
 
  
 0.834
Snov_0708
KEGG: rpd:RPD_1980 bacteriophage protein.
 
     0.827
Snov_0701
Phage portal protein, HK97 family; KEGG: azc:AZC_1109 phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
    0.806
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.