STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0764PFAM: flavoprotein; KEGG: xau:Xaut_4101 flavoprotein. (187 aa)    
Predicted Functional Partners:
Snov_0749
alpha-L-glutamate ligase, RimK family; KEGG: xau:Xaut_1789 alpha-L-glutamate ligase; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; Belongs to the RimK family.
 
  
  0.972
Snov_0761
PFAM: protein of unknown function DUF556; KEGG: xau:Xaut_4098 hypothetical protein.
 
     0.951
Snov_0762
PFAM: protein of unknown function DUF447; KEGG: xau:Xaut_4099 hypothetical protein.
 
     0.950
Snov_0763
PFAM: dihydropteroate synthase DHPS; KEGG: xau:Xaut_4100 dihydropteroate synthase DhpS.
 
     0.950
Snov_0765
PFAM: aspartate/glutamate/uridylate kinase; KEGG: msl:Msil_2395 aspartate/glutamate/uridylate kinase.
 
     0.950
Snov_0753
KEGG: xau:Xaut_3535 beta-ribofuranosylaminobenzene 5'-phosphate synthase; TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein.
 
    0.799
Snov_0756
KEGG: xau:Xaut_1795 amidohydrolase 3; TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3.
 
     0.791
Snov_0755
KEGG: xau:Xaut_1796 formylmethanofuran dehydrogenase.
 
     0.790
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.786
ffsA
Formylmethanofuran/tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.786
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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