STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0770D-lactate dehydrogenase (cytochrome); KEGG: azc:AZC_4225 FAD/FMN-containing dehydrogenases; PFAM: FAD linked oxidase domain protein. (477 aa)    
Predicted Functional Partners:
Snov_0768
PFAM: plasmid stabilization system; KEGG: bam:Bamb_6594 plasmid stabilization system protein.
       0.560
Snov_0769
KEGG: rlg:Rleg_5390 putative transcriptional regulator, CopG/Arc/MetJ family; TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156.
       0.560
Snov_3455
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: azc:AZC_4665 electron transfer flavoprotein large subunit.
 
 
 0.535
Snov_3894
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: azc:AZC_0080 glycolate oxidase.
  
 0.492
Snov_3454
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: xau:Xaut_2159 electron transfer flavoprotein alpha/beta-subunit.
 
 
 0.488
Snov_0766
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: xau:Xaut_1178 tRNA/rRNA methyltransferase (SpoU).
       0.467
Snov_0767
KEGG: xau:Xaut_2599 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.467
Snov_3023
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: mch:Mchl_4039 electron transfer flavoprotein alpha subunit.
 
 
 0.448
Snov_0773
TIGRFAM: TonB family protein; KEGG: azc:AZC_1260 C-terminal TonB protein.
  
    0.447
Snov_0771
tonB-system energizer ExbB; KEGG: azc:AZC_1258 biopolymer transport protein; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel.
       0.436
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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