STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0797TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rec:RHECIAT_CH0000818 dipeptide ABC transporter, ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
Snov_0798
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2813 binding-protein-dependent transport systems inner membrane component.
 
 0.999
Snov_0799
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mno:Mnod_0489 binding-protein-dependent transport systems inner membrane component.
 0.996
Snov_3620
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4026 putative binding-protein-dependent permease.
  
 0.989
Snov_4270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0718 putative dipeptide/oligopeptide/nickel ABC transporter, permease protein.
  
 0.989
Snov_4271
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO6822 putative dipeptide/oligopeptide/nickel ABC transporter, permease protein.
 0.984
Snov_0800
PFAM: extracellular solute-binding protein family 5; KEGG: mno:Mnod_0490 extracellular solute-binding protein family 5.
 
 0.978
Snov_0796
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: rlt:Rleg2_0394 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 
0.958
Snov_3619
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tmz:Tmz1t_3550 binding-protein-dependent transport systems inner membrane component.
 
 0.924
Snov_0256
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_2635 binding-protein-dependent transport systems inner membrane component.
   
 0.889
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     
0.884
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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