STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0833PFAM: extracellular solute-binding protein family 1; KEGG: bra:BRADO6620 putative ABC transporter, periplasmic binding protein. (437 aa)    
Predicted Functional Partners:
Snov_0835
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3222 ABC transporter permease protein.
 0.988
Snov_0836
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0917 putative ABC transporter, permease protein.
 
 0.975
Snov_0843
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_0548 binding-protein-dependent transport systems inner membrane component.
 0.951
Snov_0837
KEGG: bja:blr3224 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.928
Snov_0842
PFAM: extracellular solute-binding protein family 1; KEGG: dsh:Dshi_0547 extracellular solute-binding protein.
  
  
 
0.917
Snov_1912
KEGG: sth:STH1782 sugar ABC transportor ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase.
  
 0.890
Snov_3724
KEGG: rru:Rru_A1260 ABC transporter component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.890
Snov_4104
ABC transporter related protein; KEGG: rhi:NGR_b04050 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.890
Snov_4105
ABC transporter related protein; KEGG: rhi:NGR_b04060 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.890
Snov_4330
KEGG: xau:Xaut_0503 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.890
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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