STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0861TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; KEGG: msl:Msil_0767 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3. (326 aa)    
Predicted Functional Partners:
Snov_0860
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msl:Msil_0768 binding-protein-dependent transport systems inner membrane component.
 
 
 0.992
Snov_0863
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msl:Msil_0772 binding-protein-dependent transport systems inner membrane component.
 
 
 0.991
Snov_0859
KEGG: msl:Msil_0769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.981
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.976
Snov_0850
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3464 binding-protein-dependent transport systems inner membrane component.
 
 
 0.965
ssuD
Alkanesulfonate monooxygenase, FMNH(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
  0.965
Snov_0862
KEGG: smt:Smal_2040 FMN reductase; PFAM: NADPH-dependent FMN reductase.
 
 
  0.958
Snov_0865
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; KEGG: msl:Msil_0774 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3.
 
  
 
0.954
Snov_0852
NMT1/THI5 like domain protein; KEGG: bbt:BBta_3297 putative sulfonate ABC transporter, periplasmic-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.
  
  
 
0.927
Snov_0223
PFAM: NMT1/THI5 like domain protein; KEGG: bja:bll6093 hypothetical protein.
  
  
  0.923
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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