STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0890Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (369 aa)    
Predicted Functional Partners:
Snov_0889
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 
0.800
Snov_2612
KEGG: atc:AGR_L_2910 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.789
Snov_1720
KEGG: hna:Hneap_0830 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.788
Snov_1721
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: net:Neut_0687 tripartite ATP-independent periplasmic transporter DctQ.
 
    0.787
Snov_2613
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rec:RHECIAT_CH0003886 putative TRAP mannitol/C4-dicarboxylate transporter, permease protein.
 
    0.787
Snov_2117
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rce:RC1_1740 TRAP transporter, DctQ-like membrane protein, putative.
 
    0.768
Snov_2118
KEGG: rce:RC1_1741 TRAP transporter, DctM subunit, putative; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.756
Snov_0888
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 
0.612
Snov_2116
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.497
Snov_1722
Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.432
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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