STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0919PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_1785 GCN5-related N-acetyltransferase. (167 aa)    
Predicted Functional Partners:
cysS
TIGRFAM: cysteinyl-tRNA synthetase; KEGG: bbt:BBta_3498 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.807
Snov_2309
PFAM: NUDIX hydrolase; KEGG: azc:AZC_1067 hypothetical protein.
 
    0.630
Snov_0915
KEGG: azc:AZC_1780 hypothetical protein.
 
     0.528
Snov_3354
Transcriptional activator ligand binding domain protein; PFAM: transcription activator effector binding; KEGG: azc:AZC_3711 putative transcription activator.
  
     0.528
Snov_1081
KEGG: azc:AZC_4306 hypothetical protein.
  
     0.524
Snov_4035
KEGG: xau:Xaut_0184 hypothetical protein.
 
    0.481
Snov_2114
Transcriptional regulator, XRE family; KEGG: azc:AZC_1827 hypothetical protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
  
    0.441
Snov_1338
KEGG: xau:Xaut_4196 hypothetical protein.
  
     0.411
Snov_3472
PFAM: Chorismate mutase, type II; KEGG: xau:Xaut_0395 hypothetical protein.
 
     0.408
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.