STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0922Transcriptional regulator, ArsR family; KEGG: xau:Xaut_4184 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR. (129 aa)    
Predicted Functional Partners:
Snov_0923
KEGG: azc:AZC_1507 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
       0.593
psd
Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
     0.531
Snov_0921
KEGG: hha:Hhal_1150 hypothetical protein.
     
 0.515
Snov_2100
KEGG: met:M446_4934 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
      
 0.441
Snov_0920
PFAM: conserved hypothetical protein; KEGG: xau:Xaut_4183 hypothetical protein; Belongs to the LOG family.
       0.407
Snov_0925
TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; KEGG: azc:AZC_1510 CDP-diacylglycerol-serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; outer membrane TOM13 domain protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.401
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.