STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0964PFAM: CBS domain containing protein; KEGG: pis:Pisl_0269 signal transduction protein. (131 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
 
 0.784
Snov_0965
PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: xau:Xaut_1514 flavocytochrome c sulphide dehydrogenase flavin-binding.
       0.645
Snov_0966
PFAM: Domain of unknown function DUF1791; KEGG: xau:Xaut_1515 hypothetical protein.
       0.645
Snov_0968
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_1518 oxidoreductase molybdopterin binding.
  
  
 0.554
Snov_0967
KEGG: xau:Xaut_1517 putative cytochrome.
       0.519
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.513
Snov_2713
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.447
Snov_0969
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: xau:Xaut_1519 5'-nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family.
     
 0.431
Snov_3247
ABC transporter related protein; KEGG: mdi:METDI4402 putative branched-chain amino acid ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
    0.415
Snov_3601
KEGG: xau:Xaut_4062 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
    0.415
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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