STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0983KEGG: rce:RC1_2567 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Snov_0982
KEGG: pde:Pden_4706 beta-lactamase domain-containing protein.
       0.787
Snov_0979
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2083 YeeE/YedE family protein.
       0.741
Snov_0980
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2084 YeeE/YedE family protein.
       0.741
Snov_0981
Transcriptional regulator, ArsR family; KEGG: smd:Smed_1609 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.732
Snov_0984
KEGG: gdj:Gdia_2699 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.536
Snov_0985
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: gdj:Gdia_2700 peroxiredoxin.
       0.511
Snov_0987
PFAM: protein of unknown function DUF442; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bac:BamMC406_1667 hypothetical protein.
     
 0.445
Snov_0986
KEGG: swi:Swit_3744 beta-lactamase domain-containing protein.
       0.411
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.