STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_0991TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: rle:RL1137 hypothetical protein. (485 aa)    
Predicted Functional Partners:
Snov_0990
PFAM: protein of unknown function DUF305; KEGG: rle:RL1136 hypothetical protein.
 
   
 0.980
Snov_0993
Putative transmembrane anti-sigma factor; KEGG: bja:bll6483 hypothetical protein.
 
   
 0.972
Snov_0992
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:bll6484 ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
 
  
 0.921
Snov_3269
KEGG: xau:Xaut_2671 putative sulfite:cytochrome c oxidoreductase subunit B.
 
  
 0.870
Snov_3267
KEGG: xau:Xaut_2673 putative transmembrane anti-sigma factor.
     
 0.714
Snov_0994
KEGG: bgl:bglu_2p0880 hypothetical protein.
       0.668
Snov_3330
Amino acid adenylation domain protein; KEGG: pde:Pden_2564 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase.
  
  
 0.642
Snov_0966
PFAM: Domain of unknown function DUF1791; KEGG: xau:Xaut_1515 hypothetical protein.
  
     0.569
Snov_1058
KEGG: mrd:Mrad2831_0515 hypothetical protein.
  
     0.559
Snov_3268
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: xau:Xaut_2672 oxidoreductase molybdopterin binding.
  
     0.538
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.