STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1027PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rhi:NGR_c25830 putative antibiotic biosynthesis monooxygenase. (99 aa)    
Predicted Functional Partners:
Snov_1028
PFAM: acid phosphatase (Class B); KEGG: mno:Mnod_3004 acid phosphatase (class B).
       0.727
tam
Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.
     
 0.711
Snov_4335
PFAM: Cupin 2 conserved barrel domain protein; KEGG: rhi:NGR_c25840 hypothetical protein.
      0.557
Snov_1024
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bvi:Bcep1808_4813 binding-protein-dependent transport systems inner membrane component.
       0.457
Snov_1025
KEGG: bcj:BCAM1377 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.457
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.