STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1069PFAM: Protein of unknown function DUF2133; KEGG: azc:AZC_4330 hypothetical protein. (235 aa)    
Predicted Functional Partners:
Snov_1070
KEGG: xau:Xaut_2544 hypothetical protein.
       0.759
Snov_1503
PFAM: Domain of unknown function DUF1849; KEGG: azc:AZC_2317 hypothetical protein.
  
     0.710
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.702
Snov_2805
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.700
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.668
Snov_0303
TIGRFAM: double-strand break repair protein AddB; KEGG: azc:AZC_0713 hypothetical protein.
  
     0.646
Snov_2462
PFAM: Protein of unknown function DUF1790; KEGG: azc:AZC_3980 hypothetical protein.
  
     0.610
Snov_4423
PFAM: protein of unknown function DUF721; KEGG: azc:AZC_0457 hypothetical protein.
  
     0.603
Snov_3391
PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 MucR family transcriptional regulator.
  
     0.598
Snov_0665
PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator.
  
     0.594
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.