STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1327PFAM: DSBA oxidoreductase; KEGG: azc:AZC_3072 putative outer membrane protein precursor. (258 aa)    
Predicted Functional Partners:
Snov_4422
PFAM: DSBA oxidoreductase; KEGG: xau:Xaut_1170 DsbA oxidoreductase.
  
   
 0.762
Snov_1328
PFAM: peptidase M48 Ste24p; KEGG: xau:Xaut_3498 peptidase M48 Ste24p.
 
    0.742
Snov_1237
KEGG: oan:Oant_3249 thiol:disulfide interchange protein-like protein.
  
 
 0.666
Snov_1241
Protein-disulfide reductase; KEGG: xau:Xaut_1074 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain.
  
 
 0.666
Snov_3820
PFAM: Smr protein/MutS2; KEGG: azc:AZC_4602 putative SMR protein.
  
     0.613
Snov_3325
PFAM: Disulphide bond formation protein DsbB; KEGG: xau:Xaut_3844 disulphide bond formation protein DsbB.
 
 
 0.555
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
 0.490
Snov_1325
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
 
 0.487
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.482
Snov_1329
PFAM: aminotransferase class I and II; KEGG: azc:AZC_3070 aminotransferase.
  
    0.469
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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