STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1343KEGG: azc:AZC_3616 putative cysteine desulfurase; PFAM: aminotransferase class V. (389 aa)    
Predicted Functional Partners:
Snov_2017
PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like.
  
 0.997
Snov_1690
PFAM: SirA family protein; KEGG: azc:AZC_2198 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 0.988
Snov_0240
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: xau:Xaut_4128 UBA/ThiF-type NAD/FAD binding protein.
   
 0.986
Snov_2260
PFAM: ferredoxin; KEGG: mpo:Mpop_4980 ferredoxin.
 
 0.951
Snov_1401
Rhodanese domain protein; KEGG: azc:AZC_2826 rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
 0.922
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.921
Snov_1351
KEGG: azc:AZC_3609 HesB protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
  
 0.918
Snov_3017
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: azc:AZC_1174 iron-sulfur cluster-binding protein 2.
  
 0.917
Snov_3966
PFAM: Scaffold protein Nfu/NifU; nitrogen-fixing NifU domain protein; KEGG: azc:AZC_4703 nitrogen-fixing protein.
 
 
 0.813
Snov_0298
KEGG: xau:Xaut_0076 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
 
  
 0.801
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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