STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1368PFAM: phospholipase/Carboxylesterase; KEGG: azc:AZC_1806 putative esterase. (235 aa)    
Predicted Functional Partners:
Snov_3423
KEGG: xau:Xaut_1645 hypothetical protein.
  
     0.690
Snov_3074
KEGG: xau:Xaut_2318 carbohydrate-binding family V/XII protein.
  
     0.598
Snov_1621
PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein.
  
     0.592
Snov_1285
PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_1275 hypothetical protein.
  
     0.521
Snov_4077
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.511
Snov_3985
PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_1275 hypothetical protein.
  
     0.510
Snov_1369
PFAM: protein of unknown function DUF6 transmembrane; KEGG: csa:Csal_2674 hypothetical protein.
       0.465
Snov_1559
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: mea:Mex_2p1127 potassium-tellurite ethidium and proflavin transporter.
  
     0.456
Snov_0378
Transcriptional regulator, AraC family with acetamidase/formamidase activity; KEGG: bja:blr4466 transcriptional regulatory protein; PFAM: Acetamidase/Formamidase; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
    0.447
Snov_3147
KEGG: xau:Xaut_4732 beta-lactamase domain-containing protein.
  
 
   0.447
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.