STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureDUrease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (289 aa)    
Predicted Functional Partners:
ureA
TIGRFAM: urease, gamma subunit; urease, beta subunit; KEGG: azc:AZC_1764 urease beta subunit; PFAM: Urease gamma subunit region; Urease beta subunit; Belongs to the urease beta subunit family.
 
 
 0.999
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.994
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.978
ureC
TIGRFAM: urease, alpha subunit; KEGG: rpe:RPE_3732 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein.
 
  
 0.952
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
  
 0.949
Snov_1386
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: rpd:RPD_3507 ABC transporter related; SMART: AAA ATPase.
 
   
 0.878
Snov_1385
KEGG: rpt:Rpal_4189 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.854
Snov_1387
TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: rpd:RPD_3506 ABC transporter related; SMART: AAA ATPase.
 
   
 0.853
Snov_1384
KEGG: azc:AZC_1759 ABC transporter permease protein precursor; TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.850
Snov_1383
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: rhi:NGR_b21780 ABC transporter, substrate binding protein.
 
   
 0.665
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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