STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1418PFAM: Lytic transglycosylase catalytic; Sporulation domain protein; KEGG: met:M446_4519 lytic transglycosylase catalytic. (331 aa)    
Predicted Functional Partners:
Snov_0942
PFAM: phosphopantetheine-binding; KEGG: azc:AZC_2403 acyl carrier protein.
  
  
 0.606
Snov_1419
PFAM: Integral membrane protein TerC; KEGG: psb:Psyr_2424 integral membrane protein TerC.
     
 0.506
Snov_1417
PFAM: extracellular solute-binding protein family 1; KEGG: mes:Meso_3955 twin-arginine translocation pathway signal.
       0.497
Snov_1990
CheA signal transduction histidine kinase; KEGG: mxa:MXAN_6951 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein.
 
    0.469
Snov_0940
PFAM: Beta-ketoacyl synthase; KEGG: azc:AZC_2405 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.463
Snov_4208
KEGG: sfu:Sfum_1461 hypothetical protein.
 
 
 0.436
Snov_1622
PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; KEGG: xau:Xaut_3828 lytic transglycosylase catalytic.
 
   
 0.415
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.