STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1497PFAM: AzlC family protein; KEGG: xau:Xaut_3583 AzlC family protein. (254 aa)    
Predicted Functional Partners:
Snov_1498
PFAM: branched-chain amino acid transport; KEGG: azc:AZC_1600 hypothetical protein.
 
     0.951
Snov_2468
KEGG: azc:AZC_3997 hypothetical protein.
  
     0.734
Snov_1809
KEGG: azc:AZC_3066 hypothetical protein.
  
     0.724
Snov_0915
KEGG: azc:AZC_1780 hypothetical protein.
  
     0.702
Snov_3119
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
     0.674
Snov_0077
KEGG: nha:Nham_0271 hypothetical protein.
  
     0.672
Snov_0612
Phasin; KEGG: azc:AZC_2250 hypothetical protein; TIGRFAM: phasin; PFAM: Phasin.
  
     0.663
Snov_3800
PFAM: Protein of unknown function DUF2159, secreted; KEGG: azc:AZC_0568 hypothetical protein.
  
     0.644
Snov_1494
PFAM: Phasin; KEGG: xau:Xaut_4538 hypothetical protein.
 
     0.613
Snov_1093
PFAM: SurA domain; KEGG: azc:AZC_4322 hypothetical protein.
  
    0.606
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.