STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1510PFAM: protein of unknown function DUF983; KEGG: azc:AZC_1858 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Snov_1509
PFAM: NUDIX hydrolase; KEGG: azc:AZC_1857 hypothetical protein.
 
     0.805
Snov_1846
PFAM: protein of unknown function DUF1467; KEGG: xau:Xaut_4616 hypothetical protein.
  
     0.696
Snov_4009
PFAM: protein of unknown function DUF1052; KEGG: azc:AZC_4651 hypothetical protein.
  
   
 0.693
Snov_0321
PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: azc:AZC_3683 hypothetical protein.
  
     0.687
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.687
Snov_0128
PFAM: conserved hypothetical protein; KEGG: azc:AZC_3148 hypothetical protein; Belongs to the UPF0262 family.
 
   
 0.640
Snov_4049
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xau:Xaut_0305 integral membrane sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
    0.598
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.596
Snov_1488
PFAM: conserved hypothetical protein; KEGG: azc:AZC_2829 hypothetical protein.
  
     0.538
Snov_0130
KEGG: azc:AZC_3150 hypothetical protein.
  
     0.493
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.