STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_15685-oxoprolinase (ATP-hydrolyzing); KEGG: rde:RD1_3584 hydantoin utilization protein A, putative; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein. (674 aa)    
Predicted Functional Partners:
Snov_1567
5-oxoprolinase (ATP-hydrolyzing); KEGG: rde:RD1_3585 hydantoin utilization protein B, putative; PFAM: Hydantoinase B/oxoprolinase.
 0.999
Snov_2304
KEGG: ara:Arad_3518 cytosine deaminase protein; PFAM: Amidohydrolase 3.
     
  0.900
Snov_2842
PFAM: Amidohydrolase 3; KEGG: rlg:Rleg_4666 amidohydrolase 3.
     
  0.900
Snov_3614
PFAM: Amidohydrolase 3; KEGG: xau:Xaut_4058 amidohydrolase 3.
     
  0.900
Snov_1570
KEGG: bav:BAV3295 AraC-family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
     0.605
Snov_1566
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 TMAO reductase system periplasmic protein TorT.
       0.515
Snov_1564
PFAM: inner-membrane translocator; KEGG: sit:TM1040_3252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.436
Snov_1563
PFAM: inner-membrane translocator; KEGG: rhi:NGR_b01280 putative ABC transporter, permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
     0.434
Snov_1569
PFAM: aminotransferase class-III; KEGG: bbt:BBta_1928 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.411
Snov_1562
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: met:M446_0552 molybdopterin dehydrogenase FAD-binding.
       0.405
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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