STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1570KEGG: bav:BAV3295 AraC-family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (319 aa)    
Predicted Functional Partners:
Snov_1569
PFAM: aminotransferase class-III; KEGG: bbt:BBta_1928 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.651
Snov_1567
5-oxoprolinase (ATP-hydrolyzing); KEGG: rde:RD1_3585 hydantoin utilization protein B, putative; PFAM: Hydantoinase B/oxoprolinase.
 
     0.633
Snov_1568
5-oxoprolinase (ATP-hydrolyzing); KEGG: rde:RD1_3584 hydantoin utilization protein A, putative; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein.
 
     0.605
Snov_1566
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 TMAO reductase system periplasmic protein TorT.
 
   
 0.576
Snov_1571
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.487
Snov_1575
KEGG: sit:TM1040_3256 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.
 
    0.486
Snov_1224
Efflux transporter, RND family, MFP subunit; KEGG: azc:AZC_1279 component of multidrug efflux system protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.431
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.