STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1688KEGG: oan:Oant_2870 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Snov_1759
PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding; KEGG: azc:AZC_0036 putative fatty acid synthase transmembrane protein.
  
  
 0.827
Snov_3331
PFAM: phosphopantetheine-binding; KEGG: smt:Smal_2273 phosphopantetheine-binding.
  
  
 0.817
Snov_3333
KEGG: smt:Smal_2275 AMP-dependent synthetase and ligase; TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase.
  
  
 0.817
Snov_3332
Isochorismatase; KEGG: pde:Pden_2383 isochorismatase; PFAM: isochorismatase hydrolase.
  
  
 0.808
Snov_3334
KEGG: gau:GAU_3222 isochorismate synthase; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like.
  
  
 0.733
Snov_2582
PFAM: Polyketide cyclase/dehydrase; KEGG: mpo:Mpop_1790 conserved hypothetical protein; putative signal peptide.
  
  
 0.634
Snov_4198
PFAM: Polyketide cyclase/dehydrase; KEGG: msl:Msil_0481 MxaD protein, putative.
  
  
 0.634
Snov_2033
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
    0.555
Snov_1689
PFAM: conserved hypothetical protein; KEGG: swi:Swit_0880 hypothetical protein.
       0.537
Snov_4473
KEGG: mpo:Mpop_1502 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase.
  
  
 0.438
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.