STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1712KEGG: bcm:Bcenmc03_6207 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein. (411 aa)    
Predicted Functional Partners:
Snov_4219
KEGG: swi:Swit_1864 diaminopropionate ammonia-lyase; TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
  
 0.834
Snov_1711
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: bja:bll6147 allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
     0.827
Snov_1710
KEGG: gdj:Gdia_2308 hypothetical protein.
 
 
   0.635
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 
 0.625
argG
TIGRFAM: argininosuccinate synthase; KEGG: xau:Xaut_2013 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.622
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
  
 0.537
argH
KEGG: xau:Xaut_1738 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
  
  
 0.453
Snov_3147
KEGG: xau:Xaut_4732 beta-lactamase domain-containing protein.
 
  
 0.438
Snov_1589
KEGG: mpt:Mpe_A2343 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; GCN5-related N-acetyltransferase; Belongs to the ArsC family.
 
  
 0.422
Snov_4114
PFAM: Invasion associated locus B family protein; KEGG: azc:AZC_0717 putative invasion protein B.
  
     0.416
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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