STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1729Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rle:pRL90211 LysR family transcriptional regulator. (289 aa)    
Predicted Functional Partners:
Snov_2872
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: zmn:Za10_1368 transcriptional regulator, LysR family.
  
     0.761
Snov_0343
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_0309 LysR family transcriptional regulator.
  
     0.755
Snov_2777
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mrd:Mrad2831_4767 LysR family transcriptional regulator.
  
     0.744
Snov_4347
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mrd:Mrad2831_4749 LysR family transcriptional regulator.
  
     0.737
Snov_3788
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xau:Xaut_2659 LysR family transcriptional regulator.
  
     0.727
Snov_1220
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_2385 LysR family transcriptional regulator.
  
     0.694
Snov_3466
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_4120 putative transcription regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.638
Snov_3730
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_4353 transcriptional regulator, LysR family.
  
     0.618
Snov_3776
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pin:Ping_2416 transcriptional regulator, substrate-binding of LysR family protein.
  
     0.609
Snov_1730
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rle:pRL90210 putative short-chain dehydrogenase.
 
     0.600
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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