STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1760PFAM: glycosyl transferase group 1; KEGG: rpc:RPC_4195 glycosyl transferase, group 1. (815 aa)    
Predicted Functional Partners:
Snov_1761
PFAM: ExoV-like protein; KEGG: pol:Bpro_4937 hypothetical protein.
 
 
 0.792
Snov_1765
PFAM: ExoV-like protein; KEGG: pol:Bpro_4937 hypothetical protein.
 
 
 0.767
Snov_1757
PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_5364 glycosyl transferase group 1.
 
     0.659
Snov_1759
PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding; KEGG: azc:AZC_0036 putative fatty acid synthase transmembrane protein.
 
  
 0.650
Snov_3783
KEGG: swi:Swit_4009 glycosyl transferase, group 1.
  
     0.650
Snov_3210
PFAM: NAD-dependent epimerase/dehydratase; KEGG: kse:Ksed_18630 nucleoside-diphosphate-sugar epimerase.
  
  
 0.596
Snov_2159
KEGG: azc:AZC_1866 hypothetical protein.
  
     0.564
Snov_1758
KEGG: met:M446_0318 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II.
     
 0.516
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.500
Snov_4183
TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; KEGG: azc:AZC_1403 putative 1,4-alpha-glucan branching enzyme protein; SMART: alpha amylase catalytic sub domain.
   
 0.500
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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