STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1762PFAM: Capsule polysaccharide biosynthesis protein; KEGG: mpo:Mpop_2466 capsule polysaccharide biosynthesis protein. (444 aa)    
Predicted Functional Partners:
Snov_1763
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bgl:bglu_1g06630 oxidoreductase, short-chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     0.955
Snov_1761
PFAM: ExoV-like protein; KEGG: pol:Bpro_4937 hypothetical protein.
 
   
 0.884
Snov_1755
KEGG: rhi:NGR_b09500 RkpR, polysaccharide export protein.
 
 
 
 0.847
Snov_1754
PFAM: ABC-2 type transporter; KEGG: bpe:BP1623 putative polysialic acid transport protein.
 
   
 0.820
Snov_1751
PFAM: polysaccharide export protein; KEGG: mno:Mnod_7135 polysaccharide export protein.
 
   
 0.808
Snov_1753
KEGG: rsk:RSKD131_4544 ABC polysaccharide export transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
   
 0.784
Snov_1756
PFAM: sulfatase; KEGG: mrd:Mrad2831_0949 sulfatase.
 
   
 0.780
Snov_1759
PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding; KEGG: azc:AZC_0036 putative fatty acid synthase transmembrane protein.
 
     0.768
Snov_1765
PFAM: ExoV-like protein; KEGG: pol:Bpro_4937 hypothetical protein.
 
   
 0.682
Snov_1757
PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_5364 glycosyl transferase group 1.
 
   
 0.644
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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