STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1847TIGRFAM: methylmalonyl-CoA epimerase; KEGG: xau:Xaut_4617 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (134 aa)    
Predicted Functional Partners:
Snov_0449
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: azc:AZC_1772 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
 
  
 0.981
Snov_0452
PFAM: carboxyl transferase; KEGG: azc:AZC_1775 propionyl-CoA carboxylase.
 
 
 0.974
Snov_0450
KEGG: azc:AZC_1773 putative methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase.
 
  
 0.972
Snov_0451
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: xau:Xaut_4726 carbamoyl-phosphate synthase L chain ATP-binding.
  
 
 0.907
Snov_0473
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_6034 malonyl-CoA synthase.
   
 
 0.900
Snov_1580
PFAM: AMP-dependent synthetase and ligase; KEGG: xau:Xaut_0518 malonyl-CoA synthase.
   
 
 0.900
Snov_1846
PFAM: protein of unknown function DUF1467; KEGG: xau:Xaut_4616 hypothetical protein.
       0.794
Snov_2770
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: xau:Xaut_5021 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
 
   
 0.786
Snov_0651
KEGG: azc:AZC_1535 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein.
 
  
 0.779
Snov_0369
PFAM: carboxyl transferase; KEGG: bbr:BB2690 putative carboxyl transferase.
 
 
 0.778
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.