STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1900KEGG: swi:Swit_4845 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (605 aa)    
Predicted Functional Partners:
Snov_1742
KEGG: met:M446_3129 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.903
Snov_0855
KEGG: rpf:Rpic12D_2478 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     
0.899
Snov_3688
KEGG: mmw:Mmwyl1_4307 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
   
0.898
Snov_3523
TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; KEGG: smd:Smed_4878 ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
   
0.848
Snov_0859
KEGG: msl:Msil_0769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.810
Snov_0923
KEGG: azc:AZC_1507 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
  
 
0.594
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.577
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.567
Snov_3184
KEGG: rle:pRL90044 putative transmembrane ABC transporter; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase.
  
0.539
Snov_0430
TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; KEGG: rsp:RSP_1280 CbbX protein; SMART: AAA ATPase.
   
 0.515
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.