STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1910KEGG: mrd:Mrad2831_3409 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (342 aa)    
Predicted Functional Partners:
Snov_2713
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.756
Snov_1909
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bbr:BB0722 hypothetical protein.
       0.689
Snov_1911
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cak:Caul_1797 NAD-dependent epimerase/dehydratase.
       0.610
Snov_1912
KEGG: sth:STH1782 sugar ABC transportor ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase.
 
  
 0.578
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.527
Snov_1913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_4709 binding-protein-dependent transport systems inner membrane component.
 
   
 0.521
Snov_4214
KEGG: bpt:Bpet2904 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH.
  
   
 0.482
Snov_3670
Inner-membrane translocator; KEGG: mlo:mll7018 ribose ABC transporter, ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.454
Snov_1915
PFAM: extracellular solute-binding protein family 1; KEGG: fno:Fnod_0450 extracellular solute-binding protein.
 
  
 0.449
Snov_2556
TIGRFAM: glycogen debranching enzyme GlgX; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: msl:Msil_0211 glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
     
 0.446
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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