STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1915PFAM: extracellular solute-binding protein family 1; KEGG: fno:Fnod_0450 extracellular solute-binding protein. (434 aa)    
Predicted Functional Partners:
Snov_1913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_4709 binding-protein-dependent transport systems inner membrane component.
 
 
 0.879
Snov_1914
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tex:Teth514_0396 binding-protein-dependent transport systems inner membrane component.
 
 
 0.850
Snov_0836
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0917 putative ABC transporter, permease protein.
 
 
 0.831
Snov_0835
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3222 ABC transporter permease protein.
 
 
 0.822
Snov_1912
KEGG: sth:STH1782 sugar ABC transportor ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase.
  
 
 0.717
Snov_0844
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_0549 binding-protein-dependent transport systems inner membrane component.
 
 
 0.651
Snov_0843
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_0548 binding-protein-dependent transport systems inner membrane component.
 
 
 0.630
Snov_3723
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kol:Kole_0164 binding-protein-dependent transport systems inner membrane component.
 
 
 0.593
Snov_4102
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL2897 putative transmembrane component of ABC transporter.
 
 
 0.591
Snov_0534
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll4147 sugar ABC transporter permease protein ThuF.
 
 
 0.578
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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