STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1918PFAM: Asp/Glu/hydantoin racemase; KEGG: mrd:Mrad2831_3408 Asp/Glu/hydantoin racemase. (220 aa)    
Predicted Functional Partners:
Snov_1917
PFAM: extracellular solute-binding protein family 1; KEGG: mrd:Mrad2831_3414 hypothetical protein.
 
     0.889
Snov_1916
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mrd:Mrad2831_3410 L-lactate dehydrogenase (cytochrome).
       0.616
Snov_3662
PFAM: type III effector Hrp-dependent outers; KEGG: mno:Mnod_3436 type III effector Hrp-dependent outers.
 
     0.538
Snov_4080
PFAM: type III effector Hrp-dependent outers; KEGG: sil:SPO2561 YgbK domain-containing protein.
 
     0.529
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.