STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1925KEGG: azc:AZC_2817 type I secretion outer membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein. (469 aa)    
Predicted Functional Partners:
Snov_0503
KEGG: bpt:Bpet0632 RND efflux membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.961
Snov_0504
PFAM: acriflavin resistance protein; KEGG: pla:Plav_2000 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.957
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.922
Snov_2007
KEGG: rce:RC1_0358 HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
 
 0.783
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.767
Snov_2288
PFAM: secretion protein HlyD family protein; KEGG: xau:Xaut_1512 secretion protein HlyD family protein.
 
 
 0.743
Snov_2679
PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO6166 HlyD family secretion protein.
 
 
 0.743
Snov_3754
PFAM: secretion protein HlyD family protein; KEGG: rle:pRL90059 putative type I HlyD transporter.
 
 
 0.739
Snov_0437
PFAM: secretion protein HlyD family protein; KEGG: msl:Msil_0234 secretion protein HlyD family protein.
 
 
 0.724
Snov_3383
PFAM: secretion protein HlyD family protein; KEGG: pfl:PFL_4602 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.706
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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