STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1964Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: oca:OCAR_6150 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Snov_1961
ATPase; KEGG: nwi:Nwi_0820 ATPase.
     
 0.596
Snov_1962
KEGG: oca:OCAR_6148 virulence-associated protein E.
       0.574
Snov_1963
KEGG: ara:Arad_2289 hypothetical protein.
       0.574
Snov_1965
PFAM: integrase family protein; KEGG: smd:Smed_1348 phage integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.541
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.