STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1972KEGG: nmu:Nmul_A0535 hypothetical protein. (457 aa)    
Predicted Functional Partners:
Snov_1973
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rle:pRL110445 putative peptidase/protease.
      0.857
Snov_1971
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rle:pRL110496 putative FMN oxidoreductase.
  
    0.421
Snov_1968
KEGG: rle:pRL110493 hypothetical protein.
       0.419
Snov_1969
KEGG: rle:pRL110494 putative transmembrane protein.
       0.419
Snov_1970
KEGG: rle:pRL110495 putative transmembrane protein.
       0.419
Snov_1974
KEGG: rlg:Rleg_5383 hypothetical protein.
       0.410
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.