STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1980KEGG: mno:Mnod_7669 sulfur oxidation protein SoxY. (157 aa)    
Predicted Functional Partners:
Snov_1981
PFAM: Sulphur oxidation protein SoxZ; KEGG: lch:Lcho_0064 sulphur oxidation protein SoxZ.
 
 
 
 0.981
Snov_1979
KEGG: lch:Lcho_0066 putative cytochrome c, putative SoxX protein.
 
   
 0.957
Snov_1978
PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; FAD dependent oxidoreductase; KEGG: met:M446_3049 flavocytochrome c sulphide dehydrogenase flavin-binding.
 
   
 0.955
Snov_1982
Putative diheme cytochrome c; C-type monoheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation.
 
   
 0.954
Snov_1060
PFAM: Sulphur oxidation protein SoxZ; KEGG: met:M446_5759 sulphur oxidation protein SoxZ.
  
  
  0.940
Snov_1977
KEGG: mno:Mnod_4567 cytochrome c class I.
 
   
 0.937
Snov_0970
PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1520 sulphur oxidation protein SoxZ.
 
 
 
 0.921
Snov_0971
KEGG: xau:Xaut_1521 sulfur oxidation protein SoxY.
  
  
 
0.917
Snov_0969
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: xau:Xaut_1519 5'-nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family.
 
 
 
 0.907
Snov_1401
Rhodanese domain protein; KEGG: azc:AZC_2826 rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
     
 0.907
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.